Updated on 2024/04/09

写真a

 
Yeon-Jeong Kim
 
Organization
Graduate Faculty of Interdisciplinary Research Faculty of Medicine Basic Science for Clinical Medicine (Biochemistry 1) Assistant Professor
Title
Assistant Professor

Research History

  • RIKEN   Center for Brain Science   Research Scientist

    2003.4 - 2019.3

  • The University of Tokyo, Graduate School of Science   Undergraduate Program for Bioinfomatics and Systems Biology   Reasearch associate

    2002.4 - 2003.3

  • Japan Science and Technology Agency- CREST   Faculty of Medicine The University of Tokyo   Postdoctoral researcher

    2001.4 - 2002.3

Degree

  • Ph. D. ( 2001.3   The University of Tokyo )

Current state of research and teaching activities

  • I am specialized in protein and lipid biochemistry, and study the mechanisms of supramolecular complex formation of active zone component proteins in neuronal presynapses, liquid-liquid phase separation and their effects on neuronal dynamics.

Research Areas

  • Life Science / Molecular biology  / Lipid biochemistry, Metabolism

  • Life Science / Neuroscience-general

  • Life Science / Cell biology

  • Life Science / Functional biochemistry

  • Life Science / Medical biochemistry

  • Life Science / Molecular biology

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Research Interests

  • Lipid metabolism

  • Obesity

  • Presynapse active zone

  • Lipid metabolism

  • Obesity

  • Diabetes

  • Neurodegenerative disorder

  • Metabolic disorder

  • Sphingolipids

  • Cellular response for stress

  • Insulin resistance

Subject of research

  • Molecular scaffold of exocytosis-regulating factor, CAST/ELKS

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    2019.04

Research Projects

  • Management of storage lipids through liquid-liquid phase separation of the scaffolding protein ELKS

    Grant number:23K07986  2023.4 - 2026.3

    Japan Society for the Promotion of Science  University of Yamanashi  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (C)

    Yeon-Jeong Kim

  • 疾患特異的発症機構の理解に基づくシヌクレイノパチー病態メカニズム解明

    2022.10 - 2024.3

    国立研究開発法人日本医療研究開発機構  認知症研究開発事業 

    富田 泰輔

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    Authorship:Coinvestigator(s)  Type of fund::Funded research

  • 疾患特異的発症機構の理解に基づくシヌクレオパチー病態メカニズム解明

    Grant number:23dk0207061h0002  2022 - 2024

    日本医療研究開発機構(AMED)  認知症研究開発事業 

    金 然正

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    Authorship:Coinvestigator(s) 

  • Functional analysis of exocytosis regulator ELKS in adipokine secretion

    Grant number:20K08902  2020.4 - 2023.3

    Japan Society for the Promotion of Science  University of Yamanashi  Grants-in-Aid for Scientific Research  Grant-in-Aid for Scientific Research (C)

  • Functional analysis of exocytosis regulator ELKS in adipokine secretion

    2020.4 - 2022.3

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    Authorship:Principal investigator  Type of fund::Science research expense

  • 生体膜ドメイン構造の制御機構

    2010

    公益財団法人内藤記念科学振興財団  特定研究助成金 

    金 然正

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    Authorship:Principal investigator  Grant type:Competitive 

  • 神経系細胞分化におけるホスファチジルグルコシドの機能解析

    2009

    財団法人武田科学振興財団  医学系研究奨励(基礎) 

    金 然正

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    Authorship:Principal investigator  Grant type:Competitive 

  • 変異SOD1による運動ニューロン選択的変性の分子メカニズム

    Grant number:16790500  2004 - 2006

    文部科学省  科学研究費助成事業  若手研究(B)

    金 然正

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    Authorship:Principal investigator  Grant type:Competitive 

    S uperoxide dismutase 1(SOD1)の遺伝子変異が原因である家族性筋萎縮性側索硬化症は、運動ニューロン及びアストロサイトにおいて凝集体が観察されるなど、コンフォメーション病としての特徴を持つ。病態における凝集形成はコンフォメーション異常の変異SOD1がシャペロンやプロテアソームなどのタンパク質品質管理システムの処理能力を上回る結果であり、凝集体形成を促進する物質の関与が推測される。これらのことから、変異SOD1の凝集における不飽和脂肪酸の効果を試験管内で検討した。平成16年度から現在に至るまで、不飽和脂肪酸が変異SOD1の凝集を促進させる物質であることを見出した。細胞内遊離不飽和脂肪酸の増加原因とSOD1凝集の相関性を探るため、Neuro2、HeLa、HEK293細胞を用いモデル系を樹立した。Bovine serum aluminを用い、脂肪酸を細胞に取り入れた結果、試験管内のSOD1の凝集と同様、不飽和脂肪酸により変異SOD1の凝集が促進された。不飽和脂肪酸の増加はphospholipase A2によるものではないかと考え、RNAi法を用い、細胞レベルで検討した。その結果、カルシウム非依存性iPLA2のRNAiにより変異SOD1の凝集は減少した。これらの結果から、iPLA2が変異SOD1の凝集に関わる因子であり、家族性筋萎縮性側索硬化症の治療に向けた標的として考えられた。

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Papers

  • A light-controlled phospholipase C for imaging of lipid dynamics and controlling neural plasticity Reviewed Major achievement

    Yeon-Jeong Kim, Suguru Tohyama, Takashi Nagashima, Masashi Nagase, Yamato Hida, Shun Hamada, Ayako M. Watabe, Toshihisa Ohtsuka

    Cell Chemical Biology   2024.4( ISSN:2451-9456 )

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:Elsevier BV  

    DOI: 10.1016/j.chembiol.2024.03.001

  • Case report: Reversible brain atrophy with low titer anti-amphiphysin antibodies related to gastric adenocarcinoma Reviewed

    Ryota Amano, Yeon-Jeong Kim, Toshikazu Yoshida, Makoto Hara, Hideto Nakajima, Toshihisa Ohtsuka and Masanobu Yazawa

    Frontiers in Neurology   2023.6( ISSN:1664-2295 )

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    Language:English   Publishing type:Research paper (scientific journal)  

    DOI: https://doi.org/10.3389/fneur.2023.1211814

  • Increased PDGFRB and NF-κB signaling caused by highly prevalent somatic mutations in intracranial aneurysms Reviewed Major achievement

    Yasuyuki Shima, Shota Sasagawa, Nakao Ota, Rieko Oyama, Minoru Tanaka, Mie Kubota-Sakashita, Hirochika Kawakami, Mika Kobayashi, Naoko Takubo, Atsuko Nakanishi Ozeki, Xiaoning Sun, Yeon-Jeong Kim, Yoichiro Kamatani, Koichi Matsuda, Kazuhiro Maejima, Masashi Fujita, Kosumo Noda, Hiroyasu Kamiyama, Rokuya Tanikawa, Motoo Nagane, Junji Shibahara, Toru Tanaka, Yoshiyuki Rikitake, Nobuko Mataga, Satoru Takahashi, Kenjiro Kosaki, Hideyuki Okano, Tomomi Furihata, Ryo Nakaki, Nobuyoshi Akimitsu, Youichiro Wada, Toshihisa Ohtsuka, Hiroki Kurihara, Hiroyuki Kamiguchi, Shigeo Okabe, Masato Nakafuku, Tadafumi Kato, Hidewaki Nakagawa, Nobuhito Saito, Hirofumi Nakatomi

    Science Translational Medicine   15 ( 700 )   2023.6( ISSN:1946-6234  eISSN:1946-6242 )

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    Authorship:Last author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:American Association for the Advancement of Science (AAAS)  

    Intracranial aneurysms (IAs) are a high-risk factor for life-threatening subarachnoid hemorrhage. Their etiology, however, remains mostly unknown at present. We conducted screening for sporadic somatic mutations in 65 IA tissues (54 saccular and 11 fusiform aneurysms) and paired blood samples by whole-exome and targeted deep sequencing. We identified sporadic mutations in multiple signaling genes and examined their impact on downstream signaling pathways and gene expression in vitro and an arterial dilatation model in mice in vivo. We identified 16 genes that were mutated in at least one IA case and found that these mutations were highly prevalent (92%: 60 of 65 IAs) among all IA cases examined. In particular, mutations in six genes ( PDGFRB , AHNAK , OBSCN , RBM10 , CACNA1E , and OR5P3 ), many of which are linked to NF-κB signaling, were found in both fusiform and saccular IAs at a high prevalence (43% of all IA cases examined). We found that mutant PDGFRBs constitutively activated ERK and NF-κB signaling, enhanced cell motility, and induced inflammation-related gene expression in vitro. Spatial transcriptomics also detected similar changes in vessels from patients with IA. Furthermore, virus-mediated overexpression of a mutant PDGFRB induced a fusiform-like dilatation of the basilar artery in mice, which was blocked by systemic administration of the tyrosine kinase inhibitor sunitinib. Collectively, this study reveals a high prevalence of somatic mutations in NF-κB signaling pathway–related genes in both fusiform and saccular IAs and opens a new avenue of research for developing pharmacological interventions.

    DOI: 10.1126/scitranslmed.abq7721

  • Ubap1 knock-in mice reproduced the phenotype of SPG80 Reviewed

    Keisuke Shimozono, Haitian Nan, Takanori Hata, Kozo Saito, Yeon-Jeong Kim, Hiroaki Nagatomo, Toshihisa Ohtsuka, Schuichi Koizumi & Yoshihisa Takiyama

    JOURNAL OF HUMAN GENETICS   2022.8( ISSN:1434-5161 )

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    Language:English   Publishing type:Research paper (scientific journal)  

    SPG80 is a neurodegenerative disorder characterized by a pure type of juvenile-onset hereditary spastic paraplegia and is caused by a heterozygous mutation of the UBAP1 (ubiquitin-associated protein 1) gene. UBAP1 is one of the subunits of the endosomal sorting complex required for transport I and plays a role in endosome sorting by binding to ubiquitin-tagged proteins. In this study, we generated novel Ubap1+/E176Efx23 knock-in mice, in which the SOUBA domain of Ubap1 was completely deleted with the UMA domain being intact, as an animal model of SPG80. The knock-in mice with this heterozygous Ubap1 truncated mutation appeared normal at birth, but they developed progressive hind limb dysfunction several months later. Molecular pathologically, loss of neurons in the spinal cord and accumulation of ubiquitinated proteins were observed in Ubap1+/E176Efx23 knock-in mice. In addition, changes in the distributions of Rab5 and Rab7 in the spinal cord suggest that this mutation in Ubap1 disturbs endosome-mediated vesicular trafficking. This is the first report of a mouse model that reproduces the phenotype of SPG80. Our knock-in mice may provide a clue for understanding the molecular pathogenesis underlying UBAP1-related HSP and screening of therapeutic agents.

    DOI: 10.1038/s10038-022-01073-6

    PubMed

  • Novel SLC9A6 Variation in Female Carriers With Intellectual Disability and Atypical Parkinsonism Reviewed

    Haitian Nan;Yeon-Jeong Kim;Mai Tsuchiya;Aki Ishida;Hirotaka Haro;Masaki Hiraide;Toshihisa Ohtsuka;Yoshihisa Takiyama

    Neurology-Genetics   8 ( 1 )   e651 - e651   2022.1( ISSN:2376-7839  eISSN:2376-7839 )

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:wolters kluwer  

    <sec><title>Background and Objectives</title>Variations in <italic>SLC9A6</italic> cause the X-linked neurologic disorder Christianson syndrome in males. Meanwhile, female carriers with <italic>SLC9A6</italic> variations may remain asymptomatic or develop intellectual disability, behavioral problems, and psychiatric illnesses. Only a few female carriers have been reported to have associated atypical parkinsonism in late life.

    </sec><sec><title>Methods</title>We present a Japanese family with a novel <italic>SLC9A6</italic> variation identified by quad whole-exome sequencing analysis and a reverse phenotyping strategy. The molecular and cellular impacts of the W89R variation in vitro were examined.

    </sec><sec><title>Results</title>The missense variation (c.265T&gt;C, p.Trp89Arg) in <italic>SLC9A6</italic> cosegregated with atypical parkinsonism and intellectual disability in female carriers of this family. The female carriers in this family presented with bradykinesia, rigidity, and tremor, predominately on the right side. We found that the W89R variation changed membrane traffic of NHE6-harboring vesicles, indicating potential involvement in the disease pathogenesis.

    </sec><sec><title>Discussion</title>This study might have revealed an example of a monogenic origin of atypical parkinsonism in females with <italic>SLC9A6</italic> variations and draw attention to this understudied female-specific phenotype in clinical practice.

    </sec>

    DOI: 10.1212/NXG.0000000000000651

  • A Novel Heterozygous Missense Variant in the CIAO1 Gene in a Family with Alzheimer’s Disease: The Val67Ile Variant Promotes the Interaction of CIAO1 and Amyloid-β Protein Precursor Reviewed Major achievement

    Haitian Nan, Yeon-Jeong Kim, Mai Tsuchiya, Toko Fukao, Noriko Hara, Atsushi Hagihara, Kenya Nishioka, Nobutaka Hattori, Norikazu Hara, Takeshi Ikeuchi, Toshihisa Ohtsuka, Yoshihisa Takiyama

    JOURNAL OF ALZHEIMERS DISEASE   84 ( 2 )   1 - 7   2021.9( ISSN:1387-2877  eISSN:1875-8908 )

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    Authorship:Lead author   Language:English   Publishing type:Research paper (scientific journal)   Publisher:IOS press  

    Familial dementia is a rare inherited disease involving progressive impairment of memory, thinking, and behavior. We report a novel heterozygous pathogenic variant (c.199G &gt; A, p.Val67Ile) in the CIAO1 gene that appears to be co-segregated with Alzheimer’s disease in a Japanese family. Biochemical analysis of CIAO1 protein revealed that the variant increases the interaction of CIAO1 with immature amyloid-β protein precursor (AβPP), but not mature or soluble AβPP, indicating plausible CIAO1 involvement in AβPP processing. Our study indicates that a heterozygous variant in the CIAO1 gene may be closely related to autosomal dominant familial dementia.

    DOI: 10.3233/JAD-210706

    PubMed

  • RFC1 repeat expansion in Japanese patients with late-onset cerebellar ataxia Reviewed

    Mai Tsuchiya, Haitian Nan, Kishin Koh, Yuta Ichinose, Lihua Gao, Keisuke Shimozono, Takanori Hata, Yeon-Jeong Kim, Toshihisa Ohtsuka, Andrea Cortese, Yoshihisa Takiyama

    JOURNAL OF HUMAN GENETICS   2020.7( ISSN:1434-5161 )

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    Language:English   Publishing type:Research paper (scientific journal)  

  • Roles of GPRC5 family proteins: Focusing on GPRC5B and lipid-mediated signaling Reviewed

    Yoshio Hirabayashi, Yeon-Jeong Kim

    JOURNAL OF BIOCHEMISTRY   167 ( 6 )   541 - 547   2020.3( ISSN:0021-924X )

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    Authorship:Last author   Language:English   Publishing type:Research paper (scientific journal)  

  • A Drosophila orphan G protein-coupled receptor BOSS functions as a glucose-responding receptor: Loss of boss causes abnormal energy metabolism Reviewed Major achievement

    Ayako Kohyama-Koganeya, Yeon-Jeong Kim, Masayuki Miura, Yoshio Hirabayashi

    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA   105 ( 40 )   15328 - 15333   2008.10( ISSN:0027-8424 )

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    Language:English   Publishing type:Research paper (scientific journal)   Publisher:NATL ACAD SCIENCES  

    Glucose, one of the most important nutrients for animals, acts as a regulatory signal that controls the secretion of hormones, such as insulin, by endocrine tissues. However, how organisms respond to extracellular glucose and how glucose controls nutrient homeostasis remain unknown. Here, we show that a putative Drosophila melanogaster G protein-coupled receptor, previously identified as Bride of sevenless (BOSS), responds to extracellular glucose and regulates sugar and lipid metabolism. We found that BOSS was expressed in the fat body, a nutrient-sensing tissue equivalent to mammalian liver and adipose tissues, and in photoreceptor cells. Boss null mutants had small bodies, exhibited abnormal sugar and lipid metabolism (elevated circulating sugar and lipid levels, impaired lipid mobilization to oenocytes), and were sensitive to nutrient deprivation stress. These phenotypes are reminiscent of flies defective in insulin signaling. Consistent with these findings are the observations that boss mutants had reduced PI3K activity and phospho-AKT levels, which indicates that BOSS is required for proper insulin signaling. Because human G protein-coupled receptor 5B and the seven-transmembrane domain of BOSS share the same sequence, our results also have important implications for glucose metabolism in humans. Thus, our study provides insight not only into the basic mechanisms of metabolic regulation but also into the pathobiological basis for diabetes and obesity.

    DOI: 10.1073/pnas.0807833105

    Web of Science

    PubMed

    Other Link: http://orcid.org/0000-0003-1482-7319

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Presentations

  • アルツハイマーモデルマウスの病態進行におけるシナプトミクス解析

    金然正、濱田駿、飛田耶馬人、大塚稔久

    技術交流会:科学技術振興機構・ムーンショット目標2  2024.3 

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    Event date: 2024.3

    Language:Japanese   Presentation type:Poster presentation  

    File: MS2_技術交流会要旨_金.docx

  • Optogenetic Control of Basolateral Amygdala Plasticity and Fear Memory Formation via Engineered Phospholipase C

    Yeon-Jeong Kim, Suguru Tohyama, Takashi Nagashima, Masashi Nagase, Yamato Hida, Shun Hamada, Ayako M. Watabe, Toshihisa Ohtsuka

    Neuronal Circuits: the tenth Cold Spring Harbor conference  2024.3 

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    Event date: 2024.3

    Language:English   Presentation type:Poster presentation  

  • Developing a Novel Light-Controlled Phospholipase C for the Regulation of Neural Plasticity;Behavior of Mice

    Yeon-Jeong Kim

    The 4th International Symposium on Frontend Brain Science–Yamanashi GLIA Center: University of Yamanashi  2024.2 

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    Event date: 2024.2

    Language:English   Presentation type:Oral presentation(general)  

  • Live cell-imaging of CAST/ELKS-mediated liquid-liquid phase separation regulates protein complexes in presynaptic active zone

    Yeon-Jeong Kim, Yamato Hida, Toshihisa Ohtsuka

    The 46th Annual Meeting of the Japan Neuroscience Society  2023.8 

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    Event date: 2023.8

    Language:English   Presentation type:Oral presentation(general)  

    File: 日本神経科学会2023_金然正.docx

  • Optogenetic engineering of light-controlled phospholipase C: metabolic dynamics of phosphatidylinositide.

    Yeon-Jeong Kim, Shun Hamada, Toshihisa Otsuka

    Molecular and Cellular Biology of Lipids Gordon Research Conference  2023.7 

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    Event date: 2023.7

    Language:English   Presentation type:Poster presentation  

  • 光駆動型ホスホリパーゼ C によるホスファチジルイノシトール動態の可視化

    金 然正

    第 65 回 日本脂質生化学会  2023.6 

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    Event date: 2023.6

    Language:Japanese   Presentation type:Oral presentation(general)  

    Venue:熊本   Country:Japan  

  • 光駆動型ホスホリパーゼCによるホスファチジルイノシトール動態の可視化

    金 然正, 濱田 駿, 大塚 稔久

    第65回 日本脂質生化学会  2023.6 

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    Event date: 2023.6

    Language:Japanese   Presentation type:Oral presentation(general)  

    File: 講演要旨_脂質生化学会_金然正.docx

  • Role of CAST/ELKS in the active zone function via liquid-liquid phase separation Invited

    Toshihisa Ohtsuka, Yeon-Jeong Kim

    The 44th Annual Meeting of the Japan Neuroscience Society  2021.7 

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    Event date: 2021.7

    Language:English   Presentation type:Symposium workshop panel(nominated)  

  • Role of CAST/ELKS in the active zone function via liquid-liquid phase separation Invited

    Toshihisa Ohtsuka; Yeon-Jeong Kim

    The 44th Annual Meeting of the Japan Neuroscience Society  2021.7 

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    Event date: 2021.7

    Language:English   Presentation type:Symposium workshop panel(nominated)  

    Venue:Kobe  

  • HL-60細胞の文化及びアポトーシス誘導機構におけるPtdGlc膜マイクロドメインの関与

    横山 紀子, 金 然正, 平林 義雄, 岩渕 和久

    第63回 日本脂質生化学会  2021.6  日本脂質生化学会

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    Event date: 2021.6

    Language:Japanese   Presentation type:Oral presentation(general)  

    Venue:オンライン  

  • HL-60細胞の文化及びアポトーシス誘導機構におけるPtdGlc膜マイクロドメインの関与

    横山 紀子, 金 然正, 平林 義雄, 岩渕 和久

    日本脂質生化学会  2021.6 

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    Event date: 2021.6

    Language:Japanese   Presentation type:Oral presentation(general)  

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Industrial Property Rights

  • キメラタンパク質

    金 然正、濱田 駿、大塚 稔久

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    Applicant:国立大学法人山梨大学

    Application no:特願2023-036623  Date applied:2023.3

    Country of applicant:Domestic  

    本発明は、従来における前記諸問題を解決し、以下の目的を達成することを課題とする
    。即ち、本発明は、PLCの活性化を特異的に制御できる光駆動型システムを構築するた
    めの分子を提供する。

Professional Memberships

  • セラミド研究会

  • THE JAPANESE CONFERENCE ON THE BIOCHEMISTRY OF LIPIDS

  • THE MOLECULAR BIOLOGY SOCIETY OF JAPAN